rs1479025 chr12:77925605 T>G
- Sequence
gtctccatgctctcttagtggtca[T/G]gtggttggctcattatttgagcag
- ASB in cell types
- GM12878 (female B-cells) PC9 (lung adenocarcinoma) hepatocytes
- ASB for transcription factors
- CTCF_HUMAN BHE40_HUMAN RUNX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.11 | 0.53 | 1.35 | n/a | No Hit | |||
| BHE40_HUMAN | 1.70 | -1.42 | 1.33 | n/a | No Hit | |||
| RUNX3_HUMAN | -1.79 | 1.72 | 1.33 | -3.60 | Discordant |
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Motif analysis
