rs1482269 chr11:108592916 C>G
- Sequence
ctctcccgtgcttcgctgactgcc[C/G]gcattgggtggggagattcgcctc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.10 | n/a | 1.33 | n/a | n/a | |||
| HDAC1_HUMAN | -0.70 | 1.80 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Cells_EBV-transformed_lymphocytes, Nerve_Tibial, Spleen, Thyroid