rs149476 chr5:168579695 T>G
- Sequence
ctgctggggattgtagttctccgg[T/G]tcgtgaggccccgctctctggctg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) keratinocytes breast tumor tissue
- ASB for transcription factors
- SNAI2_HUMAN PKNX1_HUMAN ZN143_HUMAN VEZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -3.17 | 2.32 | 1.50 | n/a | No Hit | |||
| PKNX1_HUMAN | 1.40 | -0.60 | 1.67 | n/a | No Hit | |||
| ZN143_HUMAN | 2.89 | 0.77 | 2.08 | n/a | No Hit | |||
| VEZF1_HUMAN | 2.21 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid