rs150299 chr15:89400106 C>T
- Sequence
cctttgttctctggcataatcgct[C/T]ccacgtccccctcccgggcggggc
- ASB in cell types
- PANC1 (pancreatic ductal adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | 0.21 | 1.47 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Thyroid, Whole_Blood