rs150305424 chr13:29571990 G>A
- Sequence
ccactcttctttgttgacctttgc[G/A]tgtacagtgttgcttcaaaaacct
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- NFIA_HUMAN SOX13_HUMAN RARA_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIA_HUMAN | -3.18 | 2.86 | 1.33 | n/a | No Hit | |||
| SOX13_HUMAN | -2.34 | 2.13 | 1.50 | n/a | n/a | |||
| RARA_HUMAN | -1.90 | 1.71 | 1.33 | 1.16 | Weak Concordant | |||
| CEBPA_HUMAN | -1.95 | 1.71 | 1.50 | n/a | No Hit | |||
| NR2F6_HUMAN | -1.38 | 1.52 | 1.50 | n/a | n/a |
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Motif analysis
