rs150541513 chr15:77633615 G>A
- Sequence
cagcctggcttcctgtccagcaga[G/A]ggcggcaggcctctctggcccgct
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma) HUVEC (umbilical vein endothelial cells)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.10 | -2.08 | 1.47 | -5.28 | Concordant | |||
| SMC3_HUMAN | 2.00 | -0.91 | 1.83 | n/a | n/a |
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Motif analysis
