rs150631 chr5:9560137 C>T
- Sequence
atgggattttacagaaggcattac[C/T]agtcccggcaaaaccagttcttaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GRHL2_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | -2.74 | 2.07 | 2.57 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.94 | 1.07 | 2.77 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, diabetic retinopathy in type 2 diabetes mellitus, fasting blood glucose, ldl cholesterol, major depressive disorder, panic disorder, total cholesterol
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Muscle_Skeletal