rs1518492 chr4:72568158 G>A
- Sequence
actgtcaaatcctagcccggccgt[G/A]gtactcccaggacacgtgtctact
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- TAF9B_HUMAN HDAC1_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAF9B_HUMAN | 2.44 | -3.84 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.79 | -1.81 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.80 | 0.05 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis