rs151949 chr5:96808142 C>T
- Sequence
cggggaagctgcgaggttgcgatg[C/T]gggggatcaggcgtaggaagtgca
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte
- ASB for transcription factors
- PKNX1_HUMAN NFRKB_HUMAN CTCF_HUMAN ZNF24_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 0.90 | 3.45 | 1.67 | n/a | No Hit | |||
| NFRKB_HUMAN | -0.83 | 2.46 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.61 | 0.70 | 1.21 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.15 | 1.42 | 1.87 | n/a | n/a | |||
| FOXM1_HUMAN | -1.99 | 2.22 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood