rs1532916 chr8:25478710 T>C
- Sequence
ctcaggtctttgcacttggctttg[T/C]gtgcataatgtccatccctagatc
- ASB in cell types
- LHSAR (prostate epithelial cells) embryonic kidney LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.03 | 0.43 | 1.51 | n/a | No Hit | |||
| GCR_HUMAN | 1.93 | -1.62 | 2.00 | -1.11 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen