rs15359 chr17:43766611 C>G
- Sequence
ggtggaaggcagcgccacctgctg[C/G]ccatcatattatggctcacatacc
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) CD34+ stem cells-derived erythroblasts 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN TEAD1_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.27 | 1.24 | 1.53 | 7.32 | Concordant | |||
| RAD21_HUMAN | -0.25 | 0.99 | 1.62 | n/a | n/a | |||
| TEAD1_HUMAN | -2.02 | 2.08 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.94 | 1.28 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood