rs1543731 chr6:8410746 C>G
- Sequence
atttttgttctactggtgcttgtt[C/G]tttgattagtcttgcatgacaggt
- ASB in cell types
- LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.15 | 1.51 | 1.62 | n/a | No Hit | |||
| ANDR_HUMAN | -0.25 | 1.25 | 1.48 | 3.01 | Concordant |
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Motif analysis
Genetic associations
GRASP biploar disorder (bipolar schizoaffective disorder), bipolar disorder, fasting blood glucose, lp-pla2 mass, mitral annular calcium
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid