rs154568 chr5:90558631 G>C
- Sequence
gcgcggacctggctgcccgctgcg[G/C]agagcagagtgcgcagcccggggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) HEK293T (embryonic kidney)
- ASB for transcription factors
- KDM1A_HUMAN KAISO_HUMAN RB_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | -3.47 | 2.59 | 2.00 | n/a | n/a | |||
| KAISO_HUMAN | 2.36 | n/a | 2.00 | n/a | No Hit | |||
| RB_HUMAN | -3.65 | 2.43 | 2.00 | n/a | n/a | |||
| ELF1_HUMAN | n/a | 2.18 | 2.50 | n/a | No Hit | |||
| P53_HUMAN | -1.75 | 2.37 | 1.92 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood