rs154569 chr5:90558508 A>G
- Sequence
cattgggacgcccaggcagaggca[A/G]gactcgcgcgctcctaagccgagg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) H1 (embryonic stem cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- NONO_HUMAN NRF1_HUMAN TAF1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NONO_HUMAN | n/a | 3.00 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | n/a | 2.78 | 2.50 | n/a | No Hit | |||
| TAF1_HUMAN | 2.33 | -2.24 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.81 | 2.01 | 2.00 | n/a | n/a | |||
| EP300_HUMAN | -1.60 | 1.54 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood