rs1546280 chr3:171170138 G>T
- Sequence
gcttgaatctctgctgatagtaat[G/T]tagttctgtctcttataaaataaa
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.97 | -0.21 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, infant head circumference, ldl cholesterol, triglycerides change with statins