rs154653 chr16:2136356 A>G
- Sequence
ccgcggtgtggatccttctcccgc[A/G]atctccgtgcgcggcccgagtcag
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) tibial nerve neural cell
- ASB for transcription factors
- NRF1_HUMAN EGR1_HUMAN NFIC_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 0.89 | 0.36 | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit | |||
| NFIC_HUMAN | 3.04 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | -0.78 | 1.12 | 1.40 | n/a | No Hit | |||
| EP300_HUMAN | -2.58 | 2.48 | 1.33 | n/a | n/a |
Items per page:
1 – 5 of 22
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid