ADASTRA v1.6.10
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rs1549797
chr10:69409189
C
>
G
Sequence
gtggagccgcccctgcgggcccac[C/G]ctgggcgcctcccagggacttggt
ASB in cell types
K562 (myelogenous leukemia)
foreskin keratinocyte
A549 (lung carcinoma)
pancreas
ASB for transcription factors
CTCF_HUMAN
KDM5C_HUMAN
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Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.41
1.20
1.00
0.02
1.47
n/a
No Hit
KDM5C_HUMAN
-0.52
1.73
1.00
0.04
2.00
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Artery_Tibial
,
Brain_Caudate_basal_ganglia
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Putamen_basal_ganglia
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Pituitary
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)