rs1551687 chr10:46223285 A>C
- Sequence
cggcctccaagccactagagggca[A/C]ccacagtgccagctgcctgcacat
- ASB in cell types
- K562 (myelogenous leukemia) H1 (embryonic stem cells) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN CTBP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.63 | 0.88 | 1.48 | 3.10 | Concordant | |||
| KDM1A_HUMAN | -0.33 | 1.74 | 1.67 | n/a | n/a | |||
| CTBP1_HUMAN | -1.53 | 1.88 | 1.33 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
