rs155309 chr1:57186396 C>A
- Sequence
gcttatttattctcacttctctgg[C/A]agataaggattatagggatataaa
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.14 | 0.22 | 1.69 | n/a | No Hit | |||
| HXB13_HUMAN | 1.71 | -0.70 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, ldl cholesterol, rheumatoid arthritis, serum creatinine, triglycerides