rs1553676 chr17:55496714 T>C
- Sequence
tcaaagagattatgttattttgca[T/C]tccccaaaagtgatggcagggaga
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte
- ASB for transcription factors
- JUN_HUMAN CTCF_HUMAN GCR_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.77 | -0.78 | 2.87 | n/a | No Hit | |||
| CTCF_HUMAN | 1.37 | -0.44 | 1.55 | n/a | No Hit | |||
| GCR_HUMAN | 1.88 | 0.24 | 2.38 | n/a | No Hit | |||
| EP300_HUMAN | 1.31 | n/a | 2.30 | n/a | n/a | |||
| RAD21_HUMAN | 1.36 | -0.64 | 3.00 | n/a | n/a |
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