rs1558067 chr7:30463664 T>C
- Sequence
ttccttgcactgtcccaggggacc[T/C]tgagcggagatgtgcatttcttat
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- TBX21_HUMAN MEF2B_HUMAN BHE40_HUMAN COE1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -2.82 | 2.64 | 1.33 | n/a | No Hit | |||
| MEF2B_HUMAN | n/a | 0.90 | 1.33 | n/a | No Hit | |||
| BHE40_HUMAN | -1.75 | 1.81 | 1.33 | n/a | No Hit | |||
| COE1_HUMAN | -0.33 | 1.14 | 1.50 | -2.10 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Muscularis, Lung, Nerve_Tibial