rs1559238 chr19:52786834 A>G
- Sequence
gttggctggacctgggcggggtag[A/G]ggcggggccccaggcggagagacc
- ASB in cell types
- liver foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN SP1_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | -3.58 | 2.50 | n/a | No Hit | |||
| SP1_HUMAN | 2.05 | n/a | 1.33 | 3.92 | Discordant | |||
| ELF1_HUMAN | 0.74 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
