rs155931 chr16:21300837 C>T
- Sequence
aagctgcgattctaaacaggaagc[C/T]acactggatgcgagaattggggtg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) erythroid cells
- ASB for transcription factors
- GABPA_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.44 | 0.79 | 1.89 | -0.07 | Weak Concordant | |||
| ETV5_HUMAN | 2.14 | -1.62 | 2.00 | 0.37 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), ldl cholesterol, simpson-angus scale
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid