rs1560857 chr7:43517159 T>G
- Sequence
gattttcagggccagatttcagat[T/G]tgatgctgttaatcagtttctctg
- ASB in cell types
- GM12878 (female B-cells) Th1-cells K562 (myelogenous leukemia)
- ASB for transcription factors
- TBX21_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -1.13 | 1.46 | 1.11 | 2.12 | Concordant | |||
| ARNT_HUMAN | -1.64 | 1.88 | 1.33 | n/a | No Hit |
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Motif analysis
