rs1561408 chr19:12064568 C>T
- Sequence
gtagagagggaacttgaccttgga[C/T]tgtggcttgaagcggtcagtcctg
- ASB in cell types
- liver HepG2 (hepatoblastoma)
- ASB for transcription factors
- HNF4A_HUMAN ESR1_HUMAN NFYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 2.75 | -3.41 | 1.33 | -4.26 | Concordant | |||
| ESR1_HUMAN | 1.53 | n/a | 2.50 | n/a | No Hit | |||
| NFYC_HUMAN | 1.73 | -1.62 | 1.33 | n/a | No Hit |
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Motif analysis
