rs1561679 chr6:158559965 G>C
- Sequence
ctcccggccgtggggctccgcccc[G/C]gcacggggccacgaaggagggcca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NRF1_HUMAN EGR1_HUMAN E2F1_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.65 | -0.30 | 1.11 | 4.51 | Discordant | |||
| EGR1_HUMAN | n/a | 3.16 | 1.33 | 6.46 | Concordant | |||
| E2F1_HUMAN | 1.98 | n/a | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | 0.87 | -0.87 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Pituitary, Spleen, Thyroid, Whole_Blood