rs1566571 chr15:71654283 G>A
- Sequence
cgctgcctaccactgaattggcac[G/A]tagttgaagttggctcaggaaaca
- ASB in cell types
- VCaP (prostate carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.21 | -0.31 | 1.47 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.10 | -1.93 | 2.00 | -5.71 | Concordant |
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Motif analysis
