rs156901 chr1:16513967 C>T
- Sequence
caaagccgatacggctgatgctcg[C/T]tttttctcctatgacatgcaggcg
- ASB in cell types
- 786-O (renal carcinoma) D283 Med (medulloblastoma) BEAS-2B (bronchial epithelium) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- ETS1_HUMAN NDF1_HUMAN TBX21_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETS1_HUMAN | 2.54 | -3.07 | 1.33 | n/a | No Hit | |||
| NDF1_HUMAN | 1.67 | -0.93 | 1.33 | n/a | No Hit | |||
| TBX21_HUMAN | 1.98 | -2.01 | 1.33 | n/a | No Hit | |||
| GCR_HUMAN | 1.45 | -1.27 | 1.33 | n/a | No Hit | |||
| MXI1_HUMAN | 1.83 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood