rs1569239 chr7:33130492 C>A
- Sequence
cacctcctgccagtcaaatcctgc[C/A]tttgacttcaatttcctggagaaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 1.82 | -1.14 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol change with statins, infant head circumference, refractive error, triglycerides
GTEx eQTL Adipose_Subcutaneous, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid