rs15842 chr1:1013541 T>C
- Sequence
ctcatctttgccagtacaggagct[T/C]gtgccgtggcccacagcccacagc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- ZBT26_HUMAN ZFHX2_HUMAN KLF9_HUMAN GLIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | n/a | 2.55 | 2.00 | n/a | n/a | |||
| ZFHX2_HUMAN | -2.08 | 2.13 | 2.00 | n/a | n/a | |||
| KLF9_HUMAN | -2.09 | 2.17 | 2.00 | n/a | No Hit | |||
| GLIS2_HUMAN | n/a | 1.92 | 2.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Spleen, Stomach, Thyroid, Whole_Blood