rs1597107 chr3:104102485 G>A
- Sequence
atcagtcaagtatttttggtgttt[G/A]catttcgtctgtgatccagtagat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte VCaP (prostate carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOXA1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | 0.42 | 1.43 | n/a | No Hit | |||
| FOXA1_HUMAN | -1.04 | 2.30 | 1.72 | 2.43 | Concordant | |||
| FOXK2_HUMAN | -0.47 | 2.42 | 1.92 | n/a | n/a |
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Motif analysis
