rs160239 chr14:60091966 T>C
- Sequence
gggaacgttcagggcgtctcggct[T/C]tccccgctgctgcttctgctaggc
- ASB in cell types
- fetal bone marrow-derived mononuclear cells macrophages tibial nerve breast tumor tissue
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN KMT2A_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.38 | 1.76 | 1.19 | n/a | No Hit | |||
| ESR1_HUMAN | -2.74 | 2.86 | 2.50 | n/a | No Hit | |||
| KMT2A_HUMAN | -0.08 | 2.83 | 1.50 | n/a | n/a | |||
| CEBPB_HUMAN | 0.70 | 2.83 | 1.72 | n/a | No Hit | |||
| BC11B_HUMAN | n/a | 2.53 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood