rs1609606 chr13:19783080 C>T
- Sequence
gactgaccgcgcatgcgcataacg[C/T]tgcgcgtgcaatcgacaaatctcc
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GATA1_HUMAN NRF1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | -0.06 | 2.72 | 1.75 | n/a | No Hit | |||
| NRF1_HUMAN | n/a | 2.38 | 2.00 | -1.41 | Weak Discordant | |||
| CTCF_HUMAN | 0.54 | 0.37 | 1.33 | n/a | No Hit |
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Motif analysis
