rs1610216 chr16:56608372 A>G
- Sequence
cccttccgcgccgaggcgtccccg[A/G]ggcgcaagtgggccgccttcaggg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) CD14+ monocytes tibial nerve
- ASB for transcription factors
- STAT1_HUMAN MNT_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.43 | -3.01 | 2.50 | n/a | No Hit | |||
| MNT_HUMAN | -0.27 | 1.85 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.54 | 1.59 | 2.17 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Skin_Sun_Exposed_Lower_leg