rs1620091 chr16:8661290 C>T
- Sequence
acattgtacagcagcacgtgagtt[C/T]tgagagccgccagtacccagctag
- ASB in cell types
- foreskin keratinocyte HEK293 (embryonic kidney) LNCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | 1.68 | n/a | 2.67 | |||
| HEK293 (embryonic kidney) | -0.25 | 0.57 | 1.92 | |||
| LNCaP (prostate carcinoma) | 0.11 | 1.98 | 1.17 |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, partial epilepsy, total cholesterol change with statins, triglycerides change with statins
GTEx eQTL Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid, Whole_Blood