rs162330 chr2:38092354 C>A
- Sequence
cccggtggtgatttgtacaaatga[C/A]gcaacgctatccagcttcccagaa
- ASB in cell types
- coronary artery smooth muscle tibial nerve macrophages SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- JUND_HUMAN EP300_HUMAN JUN_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUND_HUMAN | 2.70 | -3.00 | 1.33 | n/a | No Hit | |||
| EP300_HUMAN | 1.91 | 0.28 | 1.43 | n/a | n/a | |||
| JUN_HUMAN | 2.57 | -2.87 | 1.33 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.46 | -0.56 | 2.17 | -0.40 | Weak Concordant | |||
| STAT1_HUMAN | 1.24 | -2.77 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP birth weight, homa-b, psoriasis and/or psoriatic arthritis, psoriasis only (no arthritis), psoriatic arthritis, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Liver, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid