rs1632169 chr18:36129799 G>C
- Sequence
gggaacggagagtctcaggggggc[G/C]gggctgcctccgtctggccctcgg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) fetal bone marrow-derived mononuclear cells HEK293T (embryonic kidney)
- ASB for transcription factors
- MEF2B_HUMAN ATF1_HUMAN KMT2A_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | -1.83 | 1.62 | 1.33 | n/a | No Hit | |||
| ATF1_HUMAN | 2.49 | n/a | 2.00 | n/a | No Hit | |||
| KMT2A_HUMAN | 0.56 | 2.47 | 1.28 | n/a | n/a | |||
| CLOCK_HUMAN | n/a | 2.15 | 4.00 | n/a | No Hit | |||
| KLF11_HUMAN | 1.27 | -0.77 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood