rs1636443 chr7:101688527 T>C
- Sequence
gcgccgcgctaacgaggatcggga[T/C]agaccggaggggccgcgctgccac
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | -0.03 | 1.08 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.15 | 0.99 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.68 | 0.78 | 1.75 | -0.13 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP birth weight, eye color, hdl cholesterol, obesity with early age of onset (age >2), refractive error, total cholesterol