rs164631 chr19:4139776 A>G
- Sequence
gggtaggggtagaggacagggcag[A/G]tcatgcagcacattgtggaccata
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- HDAC2_HUMAN COT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | 2.01 | -0.87 | 2.00 | n/a | n/a | |||
| COT1_HUMAN | 1.82 | -1.67 | 2.00 | 0.98 | Weak Discordant | |||
| FOXK2_HUMAN | 1.28 | -0.17 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, microalbuminuria, mitral annular calcium, total cholesterol, triglycerides change with statins