rs1650912 chr5:142342565 A>C
- Sequence
atgtgggccgggacaatagtgcca[A/C]gtcactgctgatgagaggcctgtg
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- CREB1_HUMAN NC2A_HUMAN IKZF1_HUMAN ERR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -2.00 | 2.51 | 1.42 | 3.52 | Concordant | |||
| NC2A_HUMAN | -2.32 | 2.24 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | -0.29 | 1.63 | 2.00 | n/a | No Hit | |||
| ERR1_HUMAN | 1.48 | 0.83 | 1.62 | n/a | No Hit |
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Motif analysis
