rs16516 chr17:39153835 T>C
- Sequence
cggcaaaccgaccgcacgtagtcg[T/C]ttagtggtattgctgcgcaggcgc
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) GM12878 (female B-cells) monocyte-derived dendritic cells
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN FOXK2_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.44 | 0.64 | 1.21 | n/a | No Hit | |||
| SPI1_HUMAN | 1.72 | n/a | 2.25 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.65 | 0.12 | 1.67 | n/a | n/a | |||
| CREB1_HUMAN | -0.52 | 1.15 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4