rs166539 chr19:40425810 T>C
- Sequence
ctgtcggacccagggatcgaactc[T/C]gtgaaggacccggccgctggtagc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN KDM1A_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.19 | 0.38 | 1.69 | n/a | No Hit | |||
| BCL3_HUMAN | 1.05 | 0.11 | 1.50 | n/a | n/a | |||
| KDM1A_HUMAN | -2.10 | 2.00 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.68 | 0.65 | 1.60 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood