rs16776 chr1:204102229 C>T
- Sequence
aaaggtgagatttcatcagcctgg[C/T]gggtaaacatggctgtttgcagac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -1.26 | 1.82 | 1.70 | 3.10 | Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, chronic kidney disease, comorbid depressive syndrome and alcohol dependence, forward wave amplitude, hdl cholesterol, hypertension (early onset hypertension), serum creatinine