rs16849152 chr1:15595279 A>C
- Sequence
tgaatgttatgcagtttcagaatc[A/C]agccaggagagggcacagaaaact
- ASB in cell types
- gastroesophageal sphincter HepG2 (hepatoblastoma) esophagus squamous epithelium bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN TEAD3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.11 | 1.39 | 1.42 | 1.81 | Weak Concordant | |||
| TEAD3_HUMAN | -2.28 | 2.19 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 0.26 | 1.03 | 1.38 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, refractive error, serum creatinine, systolic blood pressure (sbp), waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood