rs1688032 chr19:35107747 A>C
- Sequence
agcccattgactccaaagggcagc[A/C]cagcagatggactgctattatccc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PKNX1_HUMAN IKZF1_HUMAN EGR1_HUMAN ERR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.49 | -3.75 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.06 | -0.81 | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 1.53 | -1.67 | 2.00 | n/a | No Hit | |||
| ERR1_HUMAN | 2.26 | -3.09 | 2.00 | 0.75 | Weak Discordant | |||
| ARI1B_HUMAN | 2.27 | -3.00 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Heart_Left_Ventricle, Liver, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg