ADASTRA v1.6.10
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rs16880872
chr5:53096187
G
>
A
Sequence
cttgagagatcttcactgtaccag[G/A]tgctcagtaactgtgtaagatgtc
ASB in cell types
foreskin keratinocyte
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
Selected columns
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Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
foreskin keratinocyte
n/a
0.44
1.00
0.02
2.67
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
height
,
ldl cholesterol
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Brain_Spinal_cord_cervical_c-1
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale