rs16902290 chr5:34486431 A>G
- Sequence
ggaacaaaatcatctgttagaaag[A/G]gtatgcaggaggttggagtaggca
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.16 | 0.06 | 1.60 | n/a | No Hit | |||
| RAD21_HUMAN | 1.43 | -0.39 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.37 | -0.13 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, asthma, comorbid depressive syndrome and alcohol dependence, hdl cholesterol, hdl cholesterol change with statins, transmission distortion