rs16910241 chr12:14769975 C>A
- Sequence
ggggattcccggcaacttggcgac[C/A]tgcaggtgatctggcctttcatgc
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) neural cell HepG2 (hepatoblastoma)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN RAD21_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.36 | 0.98 | 1.65 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.86 | -0.90 | 1.67 | n/a | n/a | |||
| RAD21_HUMAN | -1.39 | 1.62 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.06 | -1.64 | 2.00 | n/a | No Hit | |||
| RFOX2_HUMAN | -1.81 | 1.98 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid