rs16935963 chr10:78459252 T>A
- Sequence
ggccttcattttgcaaaaacatga[T/A]agtaaacccaaatgcaaatgtgaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- HTF4_HUMAN TCF7_HUMAN NCOR1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 3.11 | -0.15 | 1.33 | n/a | No Hit | |||
| TCF7_HUMAN | -2.77 | 2.50 | 1.33 | 6.27 | Concordant | |||
| NCOR1_HUMAN | -1.59 | 1.80 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | 0.04 | 1.19 | 1.33 | n/a | No Hit |
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Motif analysis
