rs16948401 chr17:47810372 G>A
- Sequence
aaaaccgctgagtcagatgacctc[G/A]atgggcccttccagctctactacg
- ASB in cell types
- GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- RAD51_HUMAN ESR1_HUMAN IKZF2_HUMAN BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 2.55 | -0.16 | 1.42 | n/a | n/a | |||
| ESR1_HUMAN | 0.85 | 0.29 | 1.64 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.94 | -0.33 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | 1.94 | -1.67 | 1.33 | n/a | No Hit | |||
| TBX21_HUMAN | 1.43 | 0.58 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood